Module: process

Module: process.BaseProcess

class flika.process.BaseProcess.WindowSelector

This widget is a button with a label. Once you click the button, the widget waits for you to click a Window object. Once you do, it sets self.window to be the window, and it sets the label to be the widget name.

setValue(window)

This function is written to satify the requirement that all items have a setValue function to recall from settings the last set value.

class flika.process.BaseProcess.FileSelector(filetypes='*.*')

This widget is a button with a label. Once you click the button, the widget waits for you to select a file to save. Once you do, it sets self.filename and it sets the label.

class flika.process.BaseProcess.ColorSelector

This widget is a button with a label. Once you click the button, the widget waits for you to select a color. Once you do, it sets self.color and it sets the label.

class flika.process.BaseProcess.SliderLabelOdd

This is a modified SliderLabel class that forces the user to only choose odd numbers.

class flika.process.BaseProcess.CheckBox(parent=None)

I overwrote the QCheckBox class so that every graphical element has the method ‘setValue’

class flika.process.BaseProcess.ComboBox(parent=None)

I overwrote the QComboBox class so that every graphical element has the method ‘setValue’

class flika.process.BaseProcess.BaseProcess

Subclass BaseProcess when writing your own process. Why would you want to use BaseProcess?

Module: process.binary

class flika.process.binary.Threshold

###threshold(value, darkBackground=False, keepSourceWindow=False)

Creates a boolean matrix by applying a threshold

Parameters:
value (float) – The threshold to be applied
darkBackground (bool) – If this is True, pixels below the threshold will be True
Returns:
newWindow

Module: process.color

Module: process.file_

flika.process.file_.save_file(filename=None)

Save the image in the currentWindow to a .tif file.

Parameters:filename (str) – The image or movie will be saved here.
flika.process.file_.open_file(filename=None)

Opens an image or movie file (.tif, .stk, .nd2) into a newWindow.

Parameters:filename (|) –
Returns:newWindow
flika.process.file_.close(windows=None)

Will close a window or a set of windows.

Values for windows:
‘all’ (str) – closes all windows
windows (list) - closes each window in the list
(Window) - closes individual window
(None) - closes current window

Module: process.filters

Module: process.math_

Module: process.measure

Module: process.overlay

Module: process.progress_bar

Module: process.roi

Module: process.stacks